PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00161.1_g00007.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 394aa    MW: 43701.7 Da    PI: 7.7907
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00161.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH322.1e-10117140326
                              S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                               e C+ f+r G C++Gd C FaHg
  Rsa1.0_00161.1_g00007.1 117 AEVCPEFRRDGDCSRGDDCEFAHG 140
                              589********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902293.27E-6113144IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.929114142IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-6114141IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-6115142IPR000571Zinc finger, CCCH-type
PfamPF006423.7E-8117140IPR000571Zinc finger, CCCH-type
SMARTSM003562.5150173IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010187Biological Processnegative regulation of seed germination
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MDVVRPTVDI PPRKLLLASK SFPAESSPRS SPRKHNWNNK MVTSEHEEDN EDTNKETKEY  60
CYDSDTDDPY ASEHFRIFEF KIRRCTRSRS HDWTDCPFAH PGEKARRRDP RRFQYSAEVC  120
PEFRRDGDCS RGDDCEFAHG VFECWLHPIR YRTEACKDGK HCKRKVCFFA HSPRQLRVLP  180
PENVSGGPAV KSPCCMFCSS SPTSTLLGNL SHLSRSPSLS PPLSPAHKAA AFSRLRNRAA  240
SAVSEAVSAA AAAGSVNYED VLNELVNSLD TINLAEALHV SSSSPVTTPV SAAAAFASSC  300
GLNNPRLHIQ QQQSSPLQFS LSPSTPSYLT NSLSPSTPSY LTNSPRANLF GRDFTPRRRE  360
MNDVKTVAAV RDKTSFEDGS CGDPDLGWVN DLLT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013694008.10.0PREDICTED: zinc finger CCCH domain-containing protein 2-like
SwissprotQ9ZWA10.0C3H2_ARATH; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A078FT470.0A0A078FT47_BRANA; BnaA08g27570D protein
STRINGBra030542.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29872766
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03790.11e-167C3H family protein